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ingest/ncbi: use new augur curate commands #67

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3 tasks

joverlee521 opened this issue Jul 3, 2024 · 0 comments

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joverlee521 commented Jul 3, 2024

Follow up to nextstrain/ingest#43, nextstrain/ingest#44, and blocked on new Augur release.

TODOs

update curate rule to use new augur curate commands
update curate-metadata rule to use new augur curate commands
update ingest/vendored to remove cruft

joverlee521 mentioned this issue

Port scripts to augur curate nextstrain/ingest#43

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7 tasks

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