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ingest: Remove use of ncov-ingest geolocation rules #100

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merged 1 commit into from
Mar 5, 2025

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j23414
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@j23414 j23414 commented Mar 4, 2025

Description of proposed changes

Remove the use of the ncov-ingest geolocation rules since Augur now uses the built-in geolocation rules by default.

Depends on the release of
<nextstrain/augur#1745>

Related issue(s)

Part of nextstrain/public#17

Checklist

  • Checks pass

Remove the use of the ncov-ingest geolocation rules since Augur
now uses the built-in geolocation rules by default.

Depends on the release of
<nextstrain/augur#1745>

Part of larger migration
nextstrain/public#17
@j23414
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j23414 commented Mar 4, 2025

Manual check

daff diff remove-ncov-ingest-geolocation-rules/ingest/results/metadata_all.tsv original/ingest/results/metadata_all.tsv > diff.tsv
grep "\->" diff.tsv > temp.tsv

# Pivot table of temp.tsv
Screenshot 2025-03-04 at 12 07 59 PM

Seems like reasonable differences, nothing blocking from me.

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Thank you for picking this up @j23414!

@j23414 j23414 merged commit bbc5fa4 into main Mar 5, 2025
4 checks passed
@j23414 j23414 deleted the remove-ncov-ingest-geolocation-rules branch March 5, 2025 23:00
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2 participants