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The readme statement was incorrect. I noted staging location and that these are draft outputs.
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trvrb committed Aug 15, 2024
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# nextstrain.org/lassa

_Currently, this pathogen build is in draft state. Recent outputs are visible at [nextstrain.org/staging/lassa/l](https://nextstrain.org/staging/lassa/l) and [nextstrain.org/staging/lassa/s](https://nextstrain.org/staging/lassa/s), but it's not yet fully QCed or automated._

This repository contains two workflows for the analysis of Lassa virus data:

- [`ingest/`](./ingest) - Download data from GenBank, clean and curate it, separate into L and S segments, and upload it to S3
- [`phylogenetic/`](./phylogenetic) - Filter sequences, align, construct phylogeny and export for visualization

Each folder contains a README.md with more information. The results of running both workflows are publicly visible at [nextstrain.org/lassa](https://nextstrain.org/lassa).
Each folder contains a README.md with more information.

## Installation

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