Update the CI

nextstrain · Jul 9, 2024 · beeafc7 · beeafc7
1 parent e1a2373
commit beeafc7
Showing 1 changed file with 21 additions and 2 deletions.
diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -5,5 +5,24 @@ on:
   - pull_request
 
 jobs:
-  ci:
-    uses: nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@v0
+  pathogen-ci:
+    strategy:
+      matrix:
+        runtime: [docker, conda]
+    permissions:
+      id-token: write
+    uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
+    secrets: inherit
+    with:
+      runtime: ${{ matrix.runtime }}
+      run: |
+        nextstrain build \
+          phylogenetic \
+          --configfile build-configs/ci/config.yaml
+      artifact-name: output-${{ matrix.runtime }}
+      artifact-paths: |
+        phylogenetic/auspice/
+        phylogenetic/results/
+        phylogenetic/benchmarks/
+        phylogenetic/logs/
+        phylogenetic/.snakemake/log/