Merge pull request #228 from nextstrain/nextclade2-dataset

ingest: download Nextclade V2 dataset
nextstrain · Jan 18, 2024 · d51f608 · d51f608
2 parents 5d3a267 + ea10ec6
commit d51f608
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/ingest/workflow/snakemake_rules/nextclade.smk b/ingest/workflow/snakemake_rules/nextclade.smk
@@ -4,7 +4,7 @@ rule nextclade_dataset:
         temp("mpxv.zip"),
     shell:
         """
-        nextclade dataset get --name MPXV --output-zip {output}
+        nextclade2 dataset get --name MPXV --output-zip {output}
         """
 
 
@@ -13,7 +13,7 @@ rule nextclade_dataset_hMPXV:
         temp("hmpxv.zip"),
     shell:
         """
-        nextclade dataset get --name hMPXV --output-zip {output}
+        nextclade2 dataset get --name hMPXV --output-zip {output}
         """