add api key auth and implement for nabu plugin

plugin-nabu/src/main/java/ca/on/oicr/gsi/shesmu/nabu/ArchiveCaseAction.java

@@ -32,6 +32,7 @@ public class ArchiveCaseAction extends JsonParameterisedAction {
   static final HttpClient HTTP_CLIENT = HttpClient.newHttpClient();
   private final ObjectNode parameters;
   private final ObjectNode rootParameters = MAPPER.createObjectNode();
+  private Optional<String> authenticationHeader = Optional.empty();
 
   private static final Counter NabuRequestErrors =
       Counter.build(
@@ -172,21 +173,29 @@ public ActionState perform(
     HttpRequest.BodyPublisher body;
     try {
       body = HttpRequest.BodyPublishers.ofString(createRequestBody());
+      final var authentication = owner.get().NabuToken();
+      authenticationHeader =
+              authentication == null ? Optional.empty() : Optional.of(authentication);
     } catch (final Exception e) {
       e.printStackTrace();
       this.errors = Collections.singletonList(e.getMessage());
       return ActionState.FAILED;
     }
     final var baseUrl = owner.get().NabuUrl();
 
+    final var builder = HttpRequest.newBuilder(URI.create(baseUrl + "/case"));
+
+    authenticationHeader.ifPresent(header -> builder.header("X-API-KEY", header));
+
     final var request =
-        HttpRequest.newBuilder(URI.create(baseUrl + "/case"))
-            .header("Content-type", "application/json")
-            .header("Accept", "application/json")
-            .POST(body)
-            .build();
+            builder
+                    .header("Content-type", "application/json")
+                    .header("Accept", "application/json")
+                    .POST(body)
+                    .build();
 
     owner.log("NABU REQUEST: " + request, LogLevel.DEBUG, null);
+
     try (var timer = NabuRequestTime.start(baseUrl)) {
       var response =
           HTTP_CLIENT.send(request, new JsonListBodyHandler<>(MAPPER, NabuCaseArchiveDto.class));

plugin-nabu/src/main/java/ca/on/oicr/gsi/shesmu/nabu/NabuConfiguration.java

@@ -1,13 +1,24 @@
 package ca.on.oicr.gsi.shesmu.nabu;
 
+import ca.on.oicr.gsi.shesmu.plugin.authentication.AuthenticationConfiguration;
+
 public class NabuConfiguration {
 
+  private AuthenticationConfiguration authentication;
   private String url;
 
+  public AuthenticationConfiguration getAuthentication() {
+    return authentication;
+  }
+
   public String getUrl() {
     return url;
   }
 
+  public void setAuthentication(AuthenticationConfiguration authentication) {
+    this.authentication = authentication;
+  }
+
   public void setUrl(String url) {
     this.url = url;
   }

plugin-nabu/src/main/java/ca/on/oicr/gsi/shesmu/nabu/NabuPlugin.java

@@ -161,4 +161,12 @@ protected Optional<Integer> update(NabuConfiguration value) {
   public String NabuUrl() {
     return config.get().getUrl();
   }
+
+  public String NabuToken() throws RuntimeException {
+    try {
+      return config.get().getAuthentication().prepareAuthentication();
+    } catch (IOException e) {
+      throw new RuntimeException("Unable to get authentication method");
+    }
+  }
 }

shesmu-pluginapi/src/main/java/ca/on/oicr/gsi/shesmu/plugin/authentication/AuthenticationConfiguration.java

@@ -9,14 +9,18 @@
 @JsonSubTypes({
   @JsonSubTypes.Type(value = AuthenticationConfigurationBasic.class, name = "basic"),
   @JsonSubTypes.Type(value = AuthenticationConfigurationBearer.class, name = "bearer"),
+  @JsonSubTypes.Type(value = AuthenticationConfigurationAPIkey.class, name = "apikey"),
   @JsonSubTypes.Type(value = AuthenticationConfigurationFileBasic.class, name = "basic-file"),
-  @JsonSubTypes.Type(value = AuthenticationConfigurationFileBearer.class, name = "bearer-file")
+  @JsonSubTypes.Type(value = AuthenticationConfigurationFileBearer.class, name = "bearer-file"),
+  @JsonSubTypes.Type(value = AuthenticationConfigurationFileAPIkey.class, name = "apikey-file")
 })
 public abstract sealed class AuthenticationConfiguration
     permits AuthenticationConfigurationBasic,
         AuthenticationConfigurationBearer,
+        AuthenticationConfigurationAPIkey,
         AuthenticationConfigurationFileBasic,
-        AuthenticationConfigurationFileBearer {
+        AuthenticationConfigurationFileBearer,
+        AuthenticationConfigurationFileAPIkey {
 
   public static void addAuthenticationHeader(
       AuthenticationConfiguration authentication, Builder request) throws IOException {

shesmu-pluginapi/src/main/java/ca/on/oicr/gsi/shesmu/plugin/authentication/AuthenticationConfigurationAPIkey.java

@@ -0,0 +1,20 @@
+package ca.on.oicr.gsi.shesmu.plugin.authentication;
+
+import java.io.IOException;
+
+public final class AuthenticationConfigurationAPIkey extends AuthenticationConfiguration {
+  private String apikey;
+
+  public String getAPIkey() {
+    return apikey;
+  }
+
+  @Override
+  public String prepareAuthentication() throws IOException {
+    return apikey;
+  }
+
+  public void setAPIkey(String apikey) {
+    this.apikey = apikey;
+  }
+}

shesmu-pluginapi/src/main/java/ca/on/oicr/gsi/shesmu/plugin/authentication/AuthenticationConfigurationFileAPIkey.java

@@ -0,0 +1,22 @@
+package ca.on.oicr.gsi.shesmu.plugin.authentication;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Paths;
+
+public final class AuthenticationConfigurationFileAPIkey extends AuthenticationConfiguration {
+  private String apikeyFile;
+
+  public String getAPIkeyFile() {
+    return apikeyFile;
+  }
+
+  @Override
+  public String prepareAuthentication() throws IOException {
+    return Files.readString(Paths.get(apikeyFile)).trim();
+  }
+
+  public void setAPIkeyFile(String apikeyFile) {
+    this.apikeyFile = apikeyFile;
+  }
+}