Repositories list

• TSSpredator-Web

  Public
  JavaScript

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• preserve-nextflow

  Public
  A repository for the Nextflow Pipeline that optimally predicts the structure of proteins and searches for structural homologs either within a set of references or within the set of provided proteins..

  Nextflow

  •1•1•0•0•Updated Jan 20, 2025Jan 20, 2025

• MUSIAL

  Public
  Summarize SNV and indel information on single gene or genome level together with other relevant statistics based on .vcf files.

  genomicssequence-alignmentvariant-annotation+ 2variant-analysissequence-generation

  Java

  •

  GNU General Public License v3.0

  •1•5•1•0•Updated Dec 16, 2024Dec 16, 2024

• MUSIAL-WEB

  Public
  JavaScript

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• PTMVision

  Public
  Web-application for Interactive Visualization of Post Translational Modifications

  web-applicationproteomicsvisual-analytics+ 1post-translational-modification

  HTML

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 19, 2024Nov 19, 2024

• lipo-search

  Public
  A repository for the Nextflow Pipeline that optimally predicts the structure of Lipoproteins and searches for structural homologs within a set of lipoprotein references.

  MIT License

  •1•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• tss-captur-dsl2-with-RNAseq

  Public
  TSS-characterization pipeline for transcribed but unclassified RNA-transcripts

  HTML

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• tss-captur-dsl2

  Public
  TSS-characterization pipeline for transcribed but unclassified RNA-transcripts

  HTML

  •

  GNU General Public License v3.0

  •2•2•0•0•Updated Sep 23, 2024Sep 23, 2024

• manual

  Public
  HTML

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• tss-prediction-comparison

  Public
  This repository includes the tool for the prediction, comparison and visualization of TSS predicted using RNAseq. The results are then compared to provide an overview and also single-detailed visualizations.

  Jupyter Notebook

  •0•1•14•0•Updated Aug 31, 2024Aug 31, 2024

• GO-Compass

  Public
  Visual Navigation of Multiple Lists of GO terms

  JavaScript

  •0•4•4•18•Updated Apr 3, 2024Apr 3, 2024

• rnaSeq-pipeline-rework

  Public
  Python

  •

  MIT License

  •1•1•0•0•Updated Apr 1, 2024Apr 1, 2024

• ClInt

  Public
  Nextflow

  •0•0•0•0•Updated Feb 16, 2024Feb 16, 2024

• FUNAGE-Pro-processing

  Public
  Python

  •0•0•0•0•Updated Jan 24, 2024Jan 24, 2024

• VIPurPCA

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•1•0•Updated Jan 23, 2024Jan 23, 2024

• OmicsTIDE2.0

  Public
  Tool for the analysis of trends in multi-omics data

  JavaScript

  •1•3•2•0•Updated Jan 16, 2024Jan 16, 2024

• DamageProfiler

  Public
  A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage

  ngsdamageadna

  Java

  •

  GNU General Public License v3.0

  •4•17•9•0•Updated Nov 18, 2023Nov 18, 2023

• Evidente2.0

  Public
  Go

  •1•1•27•1•Updated Sep 15, 2023Sep 15, 2023

• BLASTphylo

  Public
  JavaScript

  •0•0•0•0•Updated Jun 26, 2023Jun 26, 2023

• phylotree.js

  Public
  Interactive viewer of phylogenetic trees

  JavaScript

  •

  MIT License

  •78•0•0•0•Updated Jun 9, 2023Jun 9, 2023

• tss-captur

  Public
  TSS-characterization pipeline for transcribed but unclassified RNA-transcripts

  Python

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Apr 5, 2023Apr 5, 2023

• Shiny_DESeq2

  Public
  R

  •0•1•6•0•Updated Apr 3, 2023Apr 3, 2023

• Classico

  Public
  Python

  •0•0•1•0•Updated Mar 31, 2023Mar 31, 2023

• Bio-MedVis-Challenge-IEEE-2022

  Public
  Space to collect prototypes and code for the EpiProteomicsVis challenge @ISMB2022

  JavaScript

  •0•0•1•0•Updated Jan 12, 2023Jan 12, 2023

• rnaSeq-pipeline

  Public
  Nextflow

  •

  MIT License

  •1•0•0•0•Updated Jan 3, 2023Jan 3, 2023

• inPHAP

  Public
  Interactive phased haplotype viewer

  Java

  •

  GNU General Public License v3.0

  •0•5•3•0•Updated Dec 5, 2022Dec 5, 2022

• TechnicalReport-AssemblyBestPractice

  Public
  In this technical report we elucidate/evaluate best practices for hybrid/long-read assembly.

  Jupyter Notebook

  •0•3•0•0•Updated Oct 25, 2022Oct 25, 2022

• MUSIAL-IVE

  Public
  The MUSIAL Integrative Visualization Extension provides an interactive visualization of gene variants analyzed and allocated to protein structures with MUSIAL.

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 4, 2022Sep 4, 2022

• Mayday-core

  Public
  Java

  •1•0•0•4•Updated Jun 30, 2022Jun 30, 2022

• openTSNE

  Public
  Extensible, parallel implementations of t-SNE

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •167•0•0•0•Updated Mar 16, 2022Mar 16, 2022