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    • bibt-template

      Public template
      Python
      •
      MIT License
      •0•0•0•7•Updated Jan 21, 2025Jan 21, 2025

    • orsp-pub

      Public
      Public ORSP Compliance Portal
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•25•Updated Jan 21, 2025Jan 21, 2025

    • PTA_Analysis

      Public
      WDL
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • dcc_pigean_flask

      Public
      Flask server for the Pigean method
      Python
      •1•0•2•0•Updated Jan 21, 2025Jan 21, 2025

    • viral-core

      Public
      viral-ngs: read QC, barcode metrics, spike-in metrics, Illumina metrics and demux
      Python
      •
      Other
      •1•4•10•1•Updated Jan 21, 2025Jan 21, 2025

    • backstage

      Public
      Broad Institute Engineering Portal is an Internal Developer Platform (Spotify Backstage by another name)
      TypeScript
      •0•2•1•5•Updated Jan 20, 2025Jan 20, 2025

    • kpt-packages

      Public
      A Catalog of Kpt packages and Blueprints
      MIT License
      •0•1•0•1•Updated Jan 20, 2025Jan 20, 2025

    • BEClust3D

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•8•Updated Jan 20, 2025Jan 20, 2025

    • shared-workflows

      Public
      GitHub Action workflows that can be shared by multiple repositories
      BSD 3-Clause "New" or "Revised" License
      •1•0•3•1•Updated Jan 20, 2025Jan 20, 2025

    • ml4h

      Public
      Python
      •
      Other
      •24•126•30•21•Updated Jan 20, 2025Jan 20, 2025

    • glama

      Public
      Genomic long-read analysis modules and applications
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•2•Updated Jan 20, 2025Jan 20, 2025

    • jump-profiling-recipe

      Public
      Workflow for processing cpg0016-jump profiles
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•2•6•2•Updated Jan 20, 2025Jan 20, 2025

    • carpenter-singh-lab-standards

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•3•1•Updated Jan 20, 2025Jan 20, 2025

    • EmmaEmb

      Public
      Jupyter Notebook
      •
      MIT License
      •0•4•0•0•Updated Jan 20, 2025Jan 20, 2025

    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      dockerapplicationcloudbioinformaticsscalaexecutorhpccontainerswdlga4gh
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •360•1k•745•49•Updated Jan 20, 2025Jan 20, 2025

    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •100•207•8•16•Updated Jan 20, 2025Jan 20, 2025

    • juniper

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •5•9•0•15•Updated Jan 20, 2025Jan 20, 2025

    • igv.js

      Public
      Embeddable genomic visualization component based on the Integrative Genomics Viewer
      HTML
      •
      MIT License
      •232•0•0•0•Updated Jan 20, 2025Jan 20, 2025

    • rawls

      Public
      Rawls service for DSDE
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •4•26•0•13•Updated Jan 20, 2025Jan 20, 2025

    • sam

      Public
      workbench identity and access management
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •12•42•3•32•Updated Jan 20, 2025Jan 20, 2025

    • firecloud-orchestration

      Public
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •4•31•0•6•Updated Jan 20, 2025Jan 20, 2025

    • delphy

      Public
      Fast, scalable, accurate and accessible Bayesian phylogenetics
      C++
      •
      Other
      •3•29•0•0•Updated Jan 20, 2025Jan 20, 2025

    • bits-appengine

      Public
      BITS AppEngine Python Package
      Python
      •0•0•0•1•Updated Jan 20, 2025Jan 20, 2025

    • sherlock

      Public
      DSP DevOps's deployment source-of-truth service
      golangpostgresgorm
      Go
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•10•Updated Jan 20, 2025Jan 20, 2025

    • seqr-helm

      Public
      Helm charts for the seqr project
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jan 20, 2025Jan 20, 2025

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      sciencebioinformaticsgenomicsgenomengssequencingdnasparkgatk
      Java
      •
      Other
      •597•1.8k•1.2k•136•Updated Jan 19, 2025Jan 19, 2025

    • ist_benchmarking

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Jan 19, 2025Jan 19, 2025

    • monorepo

      Public
      Compendium of tools for the Imaging Platform
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•9•9•0•Updated Jan 18, 2025Jan 18, 2025

    • dig-dug-portal

      Public
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•1•Updated Jan 18, 2025Jan 18, 2025

    • variant-curation-portal

      Public
      Web application for curating loss of function variants
      Python
      •
      MIT License
      •1•4•47•3•Updated Jan 17, 2025Jan 17, 2025