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Release v0.3.0#57

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IshaanDesai merged 91 commits intomainprecice/micro-manager:mainfrom micro-manager-v0.3.0precice/micro-manager:micro-manager-v0.3.0Copy head branch name to clipboardAug 28, 2023

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Commits on Jan 25, 2023

• Add local variant of adaptive control strategy (#11)

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• Minor corrections in logging

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Commits on Feb 16, 2023

• Get adaptivity to work on a per rank basis and add unit tests for the same (#21)

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Commits on Feb 24, 2023

• Remove logging of each active and inactive micro sim id, and instead log only number of active and inactive sims

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• Formatting

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Commits on Mar 6, 2023

• Simplify solver dummy configuration to avoid unexpected behavior

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• Add C++ bindings for manager API using pybind11 and also a corresponding solverdummy (#22)

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Commits on Mar 13, 2023

• Do some syntax changes (#26)

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Commits on Mar 17, 2023

• Fix bug in adaptivity association step (#27)

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Commits on Mar 26, 2023

• Adjust configuration so that adaptivity can be switched off without removing all settings

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• Merge branch 'develop' of github.com:precice/micro-manager into develop

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Commits on Mar 30, 2023

• Copy active micro simulation object to inactive one when it is being reactivated

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• Move initiliazation of micro sim states outside of adaptivity calculation

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Commits on Mar 31, 2023

• Change names of association step functions and variables

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• Formatting

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Commits on Apr 13, 2023

• Formatting the C++ solver dummy

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• Add test for solverdummy with adaptivity

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• Correct path

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• Change to correct precice-config and format

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• Add __deepcopy__ function and switch test order

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• Add timeout to solverdummies

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• Add adaptivity hints to solverdummy readme

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Commits on Apr 14, 2023

• Add parser argument to run_micro_manager

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• Correct path and make config file mandatory

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• Correct calling python file

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Commits on Apr 16, 2023

• Set local and global ID of copied active simulation to the original IDs of the previously inactive simulation (#34)

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Commits on Apr 17, 2023

• Delete cpp-dummy compiled file and micro-manager.log in the cleaning script

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• Merge branch 'develop' of github.com:precice/micro-manager into develop

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• Add pickling support to C++ solver dummy (#30)

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• Merge branch 'develop' into pybind-deepcopy

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• Add option for get and set state

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• Format

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• Rectify check in setstate function

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Commits on Apr 18, 2023

• Micro Manager no longer passes local ID to micro simulation during object creation (#35)

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• Merge pull request #29 from precice/pybind-deepcopy

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Commits on May 15, 2023

• Refactor adaptivity functionality into a separate class structure (#38)

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Commits on May 19, 2023

• Change branches to run tests on push (#43)

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Commits on May 23, 2023

• New domain decomposition strategy based on user input of number of processors along each axis (#41)

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• Repair global collective operations for number of sims on ranks and global ids

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• Go back to older Allgather commands to collect info on number of sims and global ids on all ranks

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• Use range for iteratable

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Commits on May 24, 2023

• Add unit tests for micro_manager file (#37)

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• Update CHANEGLOG

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• Make GitHub Actions YAML files consistent and also format them

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• Add path in checkout Action for all actions

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• Further formatting of Actions YAML files and consistent use of working-directory feature

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Commits on May 25, 2023

• Update documentation for the preCICE website (#39)

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Commits on May 30, 2023

• Add update-website workflow (#46)

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• Move to diagnostics (#45)

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Commits on May 31, 2023

• Correct permalinks in documentation and also simplify names (#47)

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• Modify docs/README.md

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• Add content of usage.md into README.md

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Commits on Jun 1, 2023

• Add user option for similarity measures (#40)

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• Create sub-heading adaptivity under simulation_params to shorten config variable names (#49)

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• Move to a relative path configuration (#48)

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Commits on Jun 3, 2023

• Reworking documentation (#50)

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• Change the config parameter 'axiswise_ranks' to 'decomposition'

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Commits on Jun 5, 2023

• Fixing links in the documentation and small corrections

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• Fix link to develop branch in installation documentation

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Commits on Jun 7, 2023

• Fixing broken links in documentation

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Commits on Jun 14, 2023

• Remove adaptivity references from main README as they are confusing here

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Commits on Jun 16, 2023

• Prefix images in documentation with tooling-micro-manager-

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• Turn off table of contents for the micro simulation conver to library doc page

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Commits on Jun 19, 2023

• Smooth over some documentation (#52)

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Commits on Jul 6, 2023

• Add global variant to adaptivity (#42)

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Commits on Jul 7, 2023

• Remove print statements from debugging and rename class creation functionality

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• Split methods in micro_manager.py into public and private methods

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• Adding incomplete and missing documentation

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Commits on Jul 14, 2023

• Split tests and add new parallel tests for global adaptivity

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• Add get_state and set_state functions to documentation, and simplify test names

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• Remove all traces of checkpoint

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Commits on Jul 18, 2023

• Update CHANGELOG

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• Add release guide

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• Add content to tests/README

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Commits on Aug 1, 2023

• Update README.md

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Commits on Aug 4, 2023

• Add logger to config and add documentation for tests

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• Formatting

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Commits on Aug 7, 2023

• Add badges in README

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• Formatting

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Commits on Aug 9, 2023

• Trigger workflows

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• Fix adaptivity test

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• use number_of_sims instead of number_of_(local/global)_sims

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Commits on Aug 24, 2023

• Update README.md

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Commits on Aug 25, 2023

• Minor updates to the release guide

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Commits on Aug 26, 2023

• Set pyprecice dependency version to <=2.5.0 to ensure compatibility

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• Restrict pyprecice to v2.5.0.4 to ensure working state

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• Update release guide

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Commits on Aug 28, 2023

• Manually set buffer for pickled message in mpi4py, and then remove warning for global adaptivity

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• Formatting

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• Bump version

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