why didn't ci run? #5
Workflow file for this run
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| on: | ||
| workflow_call: | ||
| inputs: | ||
| solved-environment-key: | ||
| required: true | ||
| type: string | ||
| matrix-key: | ||
| required: true | ||
| type: string | ||
| rebuilt-channel-key: | ||
| required: true | ||
| type: string | ||
| patched-channel-key: | ||
| required: true | ||
| type: string | ||
| distro-name: | ||
| required: true | ||
| type: string | ||
| env: | ||
| matrix_path: './matrix' | ||
| solved_environment_path: './env-file' | ||
| patched_channel_path: './patched-channel' | ||
| rebuilt_channel_path: './rebuilt-channel' | ||
| jobs: | ||
| configure_matrix: | ||
| name: 'Set up build matrix' | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| matrix: ${{ steps.set-matrix.outputs.matrix }} | ||
| steps: | ||
| - uses: actions/download-artifact@v3 | ||
| with: | ||
| name: ${{ inputs.matrix-key }} | ||
| path: '${{ env.matrix_path }}' | ||
| - id: set-matrix | ||
| run: | | ||
| echo "matrix=$(cat ${{ env.matrix_path }}/retest_matrix.json)" >> $GITHUB_OUTPUT | ||
| run_matrix: | ||
| name: '${{ matrix.package }} (${{ matrix.os }})' | ||
| needs: configure_matrix | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| package: ${{ fromJSON(needs.configure_matrix.outputs.matrix) }} | ||
| os: [ubuntu-latest, macos-latest] | ||
| runs-on: ${{ matrix.os }} | ||
| steps: | ||
| - name: get environment path | ||
| uses: actions/download-artifact@v3 | ||
| with: | ||
| name: ${{ inputs.solved-environment-key }} | ||
| path: ${{ env.solved_environment_path }} | ||
| - name: 'Fetch base channel with patches' | ||
| uses: actions/download-artifact@v3 | ||
| with: | ||
| name: ${{ inputs.patched-channel-key }} | ||
| path: ${{ env.patched_channel_path }} | ||
| - name: 'Fetch rebuilt channel' | ||
| uses: actions/download-artifact@v3 | ||
| with: | ||
| name: ${{ inputs.rebuilt-channel-key }} | ||
| path: ${{ env.rebuilt_channel_path }} | ||
| - name: Free Disk Space (Ubuntu) | ||
| if: ${{ matrix.os == 'macos-latest' }} | ||
| uses: jlumbroso/free-disk-space@main | ||
| with: | ||
| # this might remove tools that are actually needed, | ||
| # if set to "true" but frees about 6 GB | ||
| tool-cache: false | ||
| android: true | ||
| dotnet: true | ||
| haskell: true | ||
| large-packages: true | ||
| docker-images: true | ||
| swap-storage: true | ||
| - name: install environment | ||
| id: env | ||
| uses: qiime2/action-library-packaging/create-env@beta | ||
| with: | ||
| conda-prefix: './test-env' | ||
| environment-file: ${{ env.solved_environment_path }}/${{ inputs.distro-name }}-${{ matrix.os }}-conda.yml | ||
| - name: run qiime info | ||
| shell: bash | ||
| run: | | ||
| ${{ steps.env.outputs.conda-activate }} | ||
| qiime info | ||
| - name: 'collect package path' | ||
| id: 'collect-package' | ||
| uses: qiime2/action-library-packaging/collect-package@beta | ||
| with: | ||
| runner: ${{ matrix.os }} | ||
| package: ${{ matrix.package }} | ||
| channels: '["${{ env.rebuilt_channel_path }}", "${{ env.patched_channel_path }}"]' | ||
| - name: 'run tests' | ||
| uses: qiime2/action-library-packaging/test-package@beta | ||
| with: | ||
| conda-activate: ${{ steps.env.outputs.conda-activate }} | ||
| package-path: ${{ steps.collect-package.outputs.path }} | ||
