Merge pull request #66 from qiime2/Prepare-2024.2/fmt/2023-12-21

[fmt] Automated Trial (Prepare)

2024.2/fmt/passed/qiime2-fmt-macos-latest-conda.yml

@@ -5,7 +5,7 @@ channels:
 - defaults
 dependencies:
 - _r-mutex=1.0.1
-- anyio=4.0.0
+- anyio=4.2.0
 - appdirs=1.4.4
 - appnope=0.1.3
 - argon2-cffi=23.1.0
@@ -15,9 +15,7 @@ dependencies:
 - atpublic=3.0.1
 - attrs=23.1.0
 - backcall=0.2.0
-- backports=1.0
-- backports.functools_lru_cache=1.6.5
-- bcrypt=4.0.1
+- bcrypt=4.1.2
 - beautifulsoup4=4.12.2
 - bibtexparser=1.4.1
 - biom-format=2.1.14
@@ -27,39 +25,41 @@ dependencies:
 - brotli-python=1.1.0
 - bwidget=1.9.14
 - bzip2=1.0.8
-- c-ares=1.20.1
-- ca-certificates=2023.7.22
+- c-ares=1.24.0
+- ca-certificates=2023.11.17
 - cachecontrol=0.13.1
 - cached-property=1.5.2
 - cached_property=1.5.2
 - cairo=1.16.0
 - cctools_osx-64=973.0.1
-- certifi=2023.7.22
+- certifi=2023.11.17
 - cffi=1.16.0
 - chardet=5.2.0
 - charset-normalizer=3.3.2
-- clang=16.0.1
-- clang-16=16.0.1
-- clang_osx-64=16.0.1
-- clangxx=16.0.1
-- clangxx_osx-64=16.0.1
+- clang=17.0.6
+- clang-17=17.0.6
+- clang_impl_osx-64=17.0.6
+- clang_osx-64=17.0.6
+- clangxx=17.0.6
+- clangxx_impl_osx-64=17.0.6
+- clangxx_osx-64=17.0.6
 - click=8.1.7
 - colorama=0.4.6
 - comm=0.1.4
-- compiler-rt=16.0.1
-- compiler-rt_osx-64=16.0.1
+- compiler-rt=17.0.6
+- compiler-rt_osx-64=17.0.6
 - conda-pack=0.7.0
 - contourpy=1.1.1
-- cryptography=41.0.5
+- cryptography=41.0.7
 - curl=8.1.2
 - cycler=0.12.1
-- cython=3.0.5
+- cython=3.0.7
 - debugpy=1.8.0
 - decorator=4.4.2
 - defusedxml=0.7.1
 - dill=0.3.7
 - entrypoints=0.4
-- exceptiongroup=1.1.3
+- exceptiongroup=1.2.0
 - executing=2.0.1
 - expat=2.5.0
 - flufl.lock=7.1
@@ -70,28 +70,28 @@ dependencies:
 - fontconfig=2.14.2
 - fonts-conda-ecosystem=1
 - fonts-conda-forge=1
-- fonttools=4.43.1
+- fonttools=4.47.0
 - fqdn=1.5.1
 - freetype=2.12.1
 - fribidi=1.0.10
 - frictionless=5.5.0
 - gettext=0.21.1
 - gfortran_impl_osx-64=11.4.0
 - gfortran_osx-64=11.4.0
-- globus-sdk=3.30.0
-- gmp=6.2.1
+- globus-sdk=3.33.0.post0
+- gmp=6.3.0
 - graphite2=1.3.13
 - gsl=2.7
 - h5py=3.8.0
 - harfbuzz=6.0.0
 - hdf5=1.14.0
 - hdmedians=0.14.2
-- humanize=4.8.0
+- humanize=4.9.0
 - icu=70.1
-- idna=3.4
+- idna=3.6
 - ijson=3.2.3
-- importlib-resources=6.1.0
-- importlib_resources=6.1.0
+- importlib-resources=6.1.1
+- importlib_resources=6.1.1
 - iniconfig=2.0.0
 - iow=1.0.5
 - ipykernel=6.26.0
@@ -105,15 +105,15 @@ dependencies:
 - joblib=1.3.2
 - jpeg=9e
 - jsonpointer=2.4
-- jsonschema=4.19.2
-- jsonschema-specifications=2023.7.1
-- jsonschema-with-format-nongpl=4.19.2
+- jsonschema=4.20.0
+- jsonschema-specifications=2023.11.2
+- jsonschema-with-format-nongpl=4.20.0
 - jupyter_client=7.4.9
-- jupyter_core=5.5.0
-- jupyter_events=0.8.0
-- jupyter_server=2.9.1
-- jupyter_server_terminals=0.4.4
-- jupyterlab_pygments=0.2.2
+- jupyter_core=5.5.1
+- jupyter_events=0.9.0
+- jupyter_server=2.12.1
+- jupyter_server_terminals=0.5.0
+- jupyterlab_pygments=0.3.0
 - kiwisolver=1.4.5
 - krb5=1.20.1
 - lcms2=2.15
@@ -125,56 +125,58 @@ dependencies:
 - libbrotlidec=1.1.0
 - libbrotlienc=1.1.0
 - libcblas=3.9.0
-- libclang-cpp16=16.0.1
+- libclang-cpp17=17.0.6
 - libcurl=8.1.2
 - libcxx=16.0.6
 - libdeflate=1.17
 - libedit=3.1.20191231
 - libev=4.33
 - libexpat=2.5.0
-- libffi=3.4.2
+- libffi=3.4.4
 - libgfortran=5.0.0
 - libgfortran-devel_osx-64=11.4.0
 - libgfortran5=13.2.0
-- libglib=2.78.0
+- libglib=2.78.1
 - libiconv=1.17
 - liblapack=3.9.0
 - liblapacke=3.9.0
-- libllvm16=16.0.1
-- libnghttp2=1.55.1
-- libopenblas=0.3.24
+- libllvm17=17.0.6
+- libnghttp2=1.58.0
+- libopenblas=0.3.25
 - libpng=1.6.39
 - libsodium=1.0.18
-- libsqlite=3.44.0
+- libsqlite=3.44.2
 - libssh2=1.11.0
 - libtiff=4.5.0
 - libwebp-base=1.3.2
 - libxcb=1.13
 - libxml2=2.10.3
+- libxslt=1.1.37
 - libzlib=1.2.13
-- llvm-openmp=17.0.4
-- llvm-tools=16.0.1
+- llvm-openmp=17.0.6
+- llvm-tools=17.0.6
 - lockfile=0.12.2
+- lxml=4.9.2
 - lz4=4.3.2
 - lz4-c=1.9.4
 - make=4.3
 - markdown-it-py=3.0.0
-- marko=1.3.1
+- marko=2.0.2
 - markupsafe=2.1.3
 - matplotlib-base=3.7.3
 - matplotlib-inline=0.1.6
 - mdurl=0.1.0
-- mistune=3.0.1
+- mistune=3.0.2
 - mpc=1.3.1
 - mpfr=4.2.1
-- msgpack-python=1.0.6
+- msgpack-python=1.0.7
 - munkres=1.1.4
 - natsort=8.4.0
 - nbclassic=1.0.0
 - nbclient=0.8.0
-- nbconvert=7.10.0
-- nbconvert-core=7.10.0
-- nbconvert-pandoc=7.10.0
+- nbconvert=7.13.0
+- nbconvert-core=7.13.0
+- nbconvert-pandoc=7.13.0
 - nbformat=5.9.2
 - ncurses=6.4
 - nest-asyncio=1.5.8
@@ -183,68 +185,68 @@ dependencies:
 - notebook-shim=0.2.3
 - numpy=1.24.4
 - openjpeg=2.5.0
-- openssl=3.1.4
+- openssl=3.2.0
 - overrides=7.4.0
 - packaging=23.2
 - pandas=1.5.3
 - pandoc=3.1.3
 - pandocfilters=1.5.0
 - pango=1.50.14
-- paramiko=3.3.1
-- parsl=2023.10.16
+- paramiko=3.4.0
+- parsl=2023.12.4
 - parso=0.8.3
 - pcre2=10.40
 - petl=1.7.14
 - pexpect=4.8.0
 - pickleshare=0.7.5
 - pillow=9.4.0
-- pip=23.3.1
+- pip=23.3.2
 - pixman=0.42.2
 - pkgutil-resolve-name=1.3.10
-- platformdirs=3.11.0
+- platformdirs=4.1.0
 - pluggy=1.3.0
 - pooch=1.8.0
-- prometheus_client=0.18.0
-- prompt-toolkit=3.0.39
-- prompt_toolkit=3.0.39
-- psutil=5.9.5
+- prometheus_client=0.19.0
+- prompt-toolkit=3.0.42
+- prompt_toolkit=3.0.42
+- psutil=5.9.7
 - pthread-stubs=0.4
 - ptyprocess=0.7.0
 - pure_eval=0.2.2
 - pycparser=2.21
-- pygments=2.16.1
+- pygments=2.17.2
 - pyjwt=2.8.0
 - pynacl=1.5.0
-- pyobjc-core=10.0
-- pyobjc-framework-cocoa=10.0
+- pyobjc-core=10.1
+- pyobjc-framework-cocoa=10.1
 - pyparsing=3.1.1
 - pysocks=1.7.1
 - pytest=7.4.3
 - python=3.8.18
 - python-dateutil=2.8.2
-- python-fastjsonschema=2.18.1
+- python-fastjsonschema=2.19.0
 - python-json-logger=2.0.7
 - python-slugify=8.0.1
 - python_abi=3.8
 - pytz=2023.3.post1
 - pyyaml=6.0.1
 - pyzmq=24.0.1
-- q2-fmt=2023.11.0.dev0
+- q2-fmt=2023.11.0.dev0+7.g22731a9
 - q2-mystery-stew=2023.11.0.dev0+2.g1836c05
 - q2-stats=2023.11.0.dev0
 - q2-types=2023.11.0.dev0+1.g8a0e191
 - q2-vizard=2023.11.0.dev0
-- q2cli=2023.11.0.dev0+5.g4819197
-- qiime2=2023.11.0.dev0+5.gcf317be
+- q2cli=2023.11.0.dev0+12.g7cf7a7a
+- qiime2=2023.11.0.dev0+15.g8ac7e3e
 - r-base=4.2.3
 - readline=8.2
-- referencing=0.30.2
+- referencing=0.32.0
 - requests=2.31.0
 - rfc3339-validator=0.1.4
 - rfc3986=2.0.0
 - rfc3986-validator=0.1.1
-- rich=13.6.0
-- rpds-py=0.10.6
+- rich=13.7.0
+- rpds-py=0.15.2
 - scikit-bio=0.5.8
 - scikit-learn=0.24.1
 - scipy=1.10.0
@@ -261,35 +263,35 @@ dependencies:
 - stringcase=1.2.0
 - tabulate=0.9.0
 - tapi=1100.0.11
-- tblib=2.0.0
-- terminado=0.17.1
+- tblib=3.0.0
+- terminado=0.18.0
 - text-unidecode=1.3
 - threadpoolctl=3.2.0
 - tinycss2=1.2.1
 - tk=8.6.13
 - tktable=2.10
 - tomli=2.0.1
-- tomlkit=0.12.1
+- tomlkit=0.12.3
 - tornado=6.3.3
 - traitlets=5.9.0
 - typeguard=2.13.3
 - typer=0.9.0
 - types-python-dateutil=2.8.19.14
-- typing-extensions=4.8.0
-- typing_extensions=4.8.0
+- typing-extensions=4.9.0
+- typing_extensions=4.9.0
 - typing_utils=0.1.0
 - tzlocal=2.1
 - unicodedata2=15.1.0
 - unifrac=1.3
 - unifrac-binaries=1.3.1
 - uri-template=1.3.0
-- urllib3=2.0.7
+- urllib3=2.1.0
 - validators=0.22.0
-- wcwidth=0.2.9
+- wcwidth=0.2.12
 - webcolors=1.13
 - webencodings=0.5.1
-- websocket-client=1.6.4
-- wheel=0.41.3
+- websocket-client=1.7.0
+- wheel=0.42.0
 - xorg-libxau=1.0.11
 - xorg-libxdmcp=1.1.3
 - xz=5.2.6