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2 changes: 1 addition & 1 deletion pr-preview/pr-19/HierarchicalEOM.jl/SIAM.html
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Expand Up @@ -365,7 +365,7 @@ <h2 class="anchored" data-anchor-id="calculate-density-of-states-dos">Calculate
<span id="cb12-2"><a href="#cb12-2"></a>dos <span class="op">=</span> <span class="fu">DensityOfStates</span>(M_odd, ados_s, d_up, ωlist)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>Calculating density of states in frequency domain...
Progress: [===== ] 19.0% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 04s)Progress: [============ ] 42.9% --- Elapsed Time: 0h 00m 02s (ETA: 0h 00m 02s)Progress: [===================== ] 71.4% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 01s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)
Progress: [===== ] 19.0% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 04s)Progress: [=========== ] 38.1% --- Elapsed Time: 0h 00m 02s (ETA: 0h 00m 03s)Progress: [================== ] 61.9% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 01s)Progress: [========================= ] 85.7% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)
[DONE]</code></pre>
</div>
<div class="cell-output cell-output-display" data-execution_count="1">
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6 changes: 3 additions & 3 deletions pr-preview/pr-19/HierarchicalEOM.jl/cavityQED.html
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Expand Up @@ -353,7 +353,7 @@ <h2 class="anchored" data-anchor-id="construct-heomls-matrix">Construct HEOMLS m
<div class="cell-output cell-output-stdout">
<pre><code>Checking the importance value for each ADOs...[DONE]
Preparing block matrices for HEOM Liouvillian superoperator (using 4 threads)...
Progress: [ ] 2.1% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 47s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 00s)
Progress: [ ] 2.1% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 47s)Progress: [ ] 3.1% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 31s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 00s)
Constructing matrix...[DONE]</code></pre>
</div>
<div class="cell-output cell-output-display" data-execution_count="1">
Expand All @@ -372,7 +372,7 @@ <h2 class="anchored" data-anchor-id="solve-time-evolution-of-ados">Solve time ev
<span id="cb9-2"><a href="#cb9-2"></a>sol_H <span class="op">=</span> <span class="fu">HEOMsolve</span>(M_Heom, ψ<span class="fl">0</span>, t_list; e_ops <span class="op">=</span> [σz, a<span class="op">'</span> <span class="op">*</span> a])</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>Solving time evolution for ADOs by Ordinary Differential Equations method...
Progress: [ ] 0.2% --- Elapsed Time: 0h 00m 02s (ETA: 0h 16m 40s)Progress: [==================== ] 67.3% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 01s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)</code></pre>
Progress: [ ] 0.2% --- Elapsed Time: 0h 00m 02s (ETA: 0h 16m 40s)Progress: [==================== ] 67.7% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 01s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)</code></pre>
</div>
<div class="cell-output cell-output-display" data-execution_count="1">
<pre><code>Solution of hierarchical EOM
Expand Down Expand Up @@ -453,7 +453,7 @@ <h2 class="anchored" data-anchor-id="power-spectrum">Power spectrum</h2>
<span id="cb19-9"><a href="#cb19-9"></a>fig</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>Calculating power spectrum in frequency domain...
Progress: [======== ] 29.9% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 02s)Progress: [================== ] 61.2% --- Elapsed Time: 0h 00m 02s (ETA: 0h 00m 01s)Progress: [============================ ] 93.5% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 00s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 00s)
Progress: [======== ] 29.9% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 02s)Progress: [================== ] 60.2% --- Elapsed Time: 0h 00m 02s (ETA: 0h 00m 01s)Progress: [========================== ] 89.6% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 00s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 00s)
[DONE]</code></pre>
</div>
<div class="cell-output cell-output-display" data-execution_count="1">
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8 changes: 4 additions & 4 deletions pr-preview/pr-19/HierarchicalEOM.jl/toc.html
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Expand Up @@ -229,7 +229,7 @@ <h3 class="anchored" data-anchor-id="examples">Examples</h3>
</tr>
</thead>
<tbody class="list">
<tr data-index="0" data-listing-date-sort="1736812800000" data-listing-file-modified-sort="1738290754043" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="402" data-listing-title-sort="Single-impurity Anderson model" data-listing-filename-sort="SIAM.qmd">
<tr data-index="0" data-listing-date-sort="1736812800000" data-listing-file-modified-sort="1738295734989" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="402" data-listing-title-sort="Single-impurity Anderson model" data-listing-filename-sort="SIAM.qmd">
<td>
<span class="listing-date">2025-01-14</span>
</td>
Expand All @@ -240,7 +240,7 @@ <h3 class="anchored" data-anchor-id="examples">Examples</h3>
<span class="listing-author">Yi-Te Huang</span>
</td>
</tr>
<tr data-index="1" data-listing-date-sort="1736726400000" data-listing-file-modified-sort="1738290754043" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="937" data-listing-title-sort="Cavity QED system" data-listing-filename-sort="cavityQED.qmd">
<tr data-index="1" data-listing-date-sort="1736726400000" data-listing-file-modified-sort="1738295734989" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="937" data-listing-title-sort="Cavity QED system" data-listing-filename-sort="cavityQED.qmd">
<td>
<span class="listing-date">2025-01-13</span>
</td>
Expand All @@ -251,7 +251,7 @@ <h3 class="anchored" data-anchor-id="examples">Examples</h3>
<span class="listing-author">Shen-Liang Yang, Yi-Te Huang</span>
</td>
</tr>
<tr data-index="2" data-listing-date-sort="1736812800000" data-listing-file-modified-sort="1738290754043" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="670" data-listing-title-sort="Driven systems and dynamical decoupling" data-listing-filename-sort="dynamical_decoupling.qmd">
<tr data-index="2" data-listing-date-sort="1736812800000" data-listing-file-modified-sort="1738295734989" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="670" data-listing-title-sort="Driven systems and dynamical decoupling" data-listing-filename-sort="dynamical_decoupling.qmd">
<td>
<span class="listing-date">2025-01-14</span>
</td>
Expand All @@ -262,7 +262,7 @@ <h3 class="anchored" data-anchor-id="examples">Examples</h3>
<span class="listing-author">Yi-Te Huang</span>
</td>
</tr>
<tr data-index="3" data-listing-date-sort="1736812800000" data-listing-file-modified-sort="1738290754043" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="850" data-listing-title-sort="Electronic Current" data-listing-filename-sort="electronic_current.qmd">
<tr data-index="3" data-listing-date-sort="1736812800000" data-listing-file-modified-sort="1738295734989" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="850" data-listing-title-sort="Electronic Current" data-listing-filename-sort="electronic_current.qmd">
<td>
<span class="listing-date">2025-01-14</span>
</td>
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4 changes: 2 additions & 2 deletions pr-preview/pr-19/QuantumToolbox.jl/toc.html
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Expand Up @@ -229,7 +229,7 @@ <h3 class="anchored" data-anchor-id="time-evolution">Time Evolution</h3>
</tr>
</thead>
<tbody class="list">
<tr data-index="0" data-listing-date-sort="1737331200000" data-listing-file-modified-sort="1738290754044" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="8" data-listing-word-count-sort="1548" data-listing-title-sort="Low rank master equation" data-listing-filename-sort="lowrank.qmd">
<tr data-index="0" data-listing-date-sort="1737331200000" data-listing-file-modified-sort="1738295734989" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="8" data-listing-word-count-sort="1548" data-listing-title-sort="Low rank master equation" data-listing-filename-sort="lowrank.qmd">
<td>
<span class="listing-date">2025-01-20</span>
</td>
Expand All @@ -240,7 +240,7 @@ <h3 class="anchored" data-anchor-id="time-evolution">Time Evolution</h3>
<span class="listing-author">Luca Gravina</span>
</td>
</tr>
<tr data-index="1" data-listing-date-sort="1737072000000" data-listing-file-modified-sort="1738290754044" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="7" data-listing-word-count-sort="1291" data-listing-title-sort="Vacuum Rabi oscillation" data-listing-filename-sort="rabi.qmd">
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<td>
<span class="listing-date">2025-01-17</span>
</td>
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8 changes: 4 additions & 4 deletions pr-preview/pr-19/search.json
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Expand Up @@ -144,14 +144,14 @@
"href": "HierarchicalEOM.jl/cavityQED.html#construct-heomls-matrix",
"title": "Cavity QED system",
"section": "Construct HEOMLS matrix",
"text": "Construct HEOMLS matrix\nHere, we consider an incoherent pumping to the atom, which can be described by an Lindblad dissipator (see here for more details).\nFurthermore, we set the important threshold to be 1e-6.\n\npump = 0.01\nJ_pump = sqrt(pump) * σm'\ntier = 2\nM_Heom = M_Boson(H_s, tier, threshold = 1e-6, Bath)\nM_Heom = addBosonDissipator(M_Heom, J_pump)\n\nChecking the importance value for each ADOs...[DONE]\nPreparing block matrices for HEOM Liouvillian superoperator (using 4 threads)...\nProgress: [ ] 2.1% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 47s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 00s)\nConstructing matrix...[DONE]\n\n\nBoson type HEOMLS matrix acting on even-parity ADOs\nsystem dims = [3, 2]\nnumber of ADOs N = 97\ndata =\nMatrixOperator(3492 × 3492)"
"text": "Construct HEOMLS matrix\nHere, we consider an incoherent pumping to the atom, which can be described by an Lindblad dissipator (see here for more details).\nFurthermore, we set the important threshold to be 1e-6.\n\npump = 0.01\nJ_pump = sqrt(pump) * σm'\ntier = 2\nM_Heom = M_Boson(H_s, tier, threshold = 1e-6, Bath)\nM_Heom = addBosonDissipator(M_Heom, J_pump)\n\nChecking the importance value for each ADOs...[DONE]\nPreparing block matrices for HEOM Liouvillian superoperator (using 4 threads)...\nProgress: [ ] 2.1% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 47s)Progress: [ ] 3.1% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 31s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 00s)\nConstructing matrix...[DONE]\n\n\nBoson type HEOMLS matrix acting on even-parity ADOs\nsystem dims = [3, 2]\nnumber of ADOs N = 97\ndata =\nMatrixOperator(3492 × 3492)"
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"title": "Cavity QED system",
"section": "Solve time evolution of ADOs",
"text": "Solve time evolution of ADOs\n\nt_list = 0:1:500\nsol_H = HEOMsolve(M_Heom, ψ0, t_list; e_ops = [σz, a' * a])\n\nSolving time evolution for ADOs by Ordinary Differential Equations method...\nProgress: [ ] 0.2% --- Elapsed Time: 0h 00m 02s (ETA: 0h 16m 40s)Progress: [==================== ] 67.3% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 01s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)\n\n\nSolution of hierarchical EOM\n(return code: Success)\n----------------------------\nBtier = 2\nFtier = 0\nnum_ados = 1\nnum_expect = 2\nODE alg.: OrdinaryDiffEqLowOrderRK.DP5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}(OrdinaryDiffEqCore.trivial_limiter!, OrdinaryDiffEqCore.trivial_limiter!, static(false))\nabstol = 1.0e-8\nreltol = 1.0e-6"
"text": "Solve time evolution of ADOs\n\nt_list = 0:1:500\nsol_H = HEOMsolve(M_Heom, ψ0, t_list; e_ops = [σz, a' * a])\n\nSolving time evolution for ADOs by Ordinary Differential Equations method...\nProgress: [ ] 0.2% --- Elapsed Time: 0h 00m 02s (ETA: 0h 16m 40s)Progress: [==================== ] 67.7% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 01s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)\n\n\nSolution of hierarchical EOM\n(return code: Success)\n----------------------------\nBtier = 2\nFtier = 0\nnum_ados = 1\nnum_expect = 2\nODE alg.: OrdinaryDiffEqLowOrderRK.DP5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}(OrdinaryDiffEqCore.trivial_limiter!, OrdinaryDiffEqCore.trivial_limiter!, static(false))\nabstol = 1.0e-8\nreltol = 1.0e-6"
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Expand All @@ -172,7 +172,7 @@
"href": "HierarchicalEOM.jl/cavityQED.html#power-spectrum",
"title": "Cavity QED system",
"section": "Power spectrum",
"text": "Power spectrum\n\nω_list = 1:0.01:3\npsd_H = PowerSpectrum(M_Heom, steady_H, a, ω_list)\n\n# plot\nfig = Figure(size = (500, 350))\nax = Axis(fig[1, 1], xlabel = L\"\\omega\")\nlines!(ax, ω_list, psd_H)\n\nfig\n\nCalculating power spectrum in frequency domain...\nProgress: [======== ] 29.9% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 02s)Progress: [================== ] 61.2% --- Elapsed Time: 0h 00m 02s (ETA: 0h 00m 01s)Progress: [============================ ] 93.5% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 00s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 00s)\n[DONE]"
"text": "Power spectrum\n\nω_list = 1:0.01:3\npsd_H = PowerSpectrum(M_Heom, steady_H, a, ω_list)\n\n# plot\nfig = Figure(size = (500, 350))\nax = Axis(fig[1, 1], xlabel = L\"\\omega\")\nlines!(ax, ω_list, psd_H)\n\nfig\n\nCalculating power spectrum in frequency domain...\nProgress: [======== ] 29.9% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 02s)Progress: [================== ] 60.2% --- Elapsed Time: 0h 00m 02s (ETA: 0h 00m 01s)Progress: [========================== ] 89.6% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 00s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 00s)\n[DONE]"
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Expand Down Expand Up @@ -256,7 +256,7 @@
"href": "HierarchicalEOM.jl/SIAM.html#calculate-density-of-states-dos",
"title": "Single-impurity Anderson model",
"section": "Calculate density of states (DOS)",
"text": "Calculate density of states (DOS)\n\nωlist = -10:1:10\ndos = DensityOfStates(M_odd, ados_s, d_up, ωlist)\n\nCalculating density of states in frequency domain...\nProgress: [===== ] 19.0% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 04s)Progress: [============ ] 42.9% --- Elapsed Time: 0h 00m 02s (ETA: 0h 00m 02s)Progress: [===================== ] 71.4% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 01s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)\n[DONE]\n\n\n21-element Vector{Float64}:\n 0.024341620652868125\n 0.04465552042384671\n 0.09077144051561165\n 0.1929888055674428\n 0.29351536894471525\n 0.23367107985909338\n 0.15864674406917825\n 0.1237987795050877\n 0.11772111509217494\n 0.14524303704733388\n ⋮\n 0.11772111509217663\n 0.12379877950508988\n 0.15864674406918147\n 0.2336710798590986\n 0.2935153689447211\n 0.1929888055674464\n 0.090771440515613\n 0.044655520423847135\n 0.024341620652868233\n\n\nplot the results\n\nfig = Figure(size = (500, 350))\nax = Axis(fig[1, 1], xlabel = L\"\\omega\")\nlines!(ax, ωlist, dos)\n\nfig"
"text": "Calculate density of states (DOS)\n\nωlist = -10:1:10\ndos = DensityOfStates(M_odd, ados_s, d_up, ωlist)\n\nCalculating density of states in frequency domain...\nProgress: [===== ] 19.0% --- Elapsed Time: 0h 00m 01s (ETA: 0h 00m 04s)Progress: [=========== ] 38.1% --- Elapsed Time: 0h 00m 02s (ETA: 0h 00m 03s)Progress: [================== ] 61.9% --- Elapsed Time: 0h 00m 03s (ETA: 0h 00m 01s)Progress: [========================= ] 85.7% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)Progress: [==============================] 100.0% --- Elapsed Time: 0h 00m 04s (ETA: 0h 00m 00s)\n[DONE]\n\n\n21-element Vector{Float64}:\n 0.024341620652868125\n 0.04465552042384671\n 0.09077144051561165\n 0.1929888055674428\n 0.29351536894471525\n 0.23367107985909338\n 0.15864674406917825\n 0.1237987795050877\n 0.11772111509217494\n 0.14524303704733388\n ⋮\n 0.11772111509217663\n 0.12379877950508988\n 0.15864674406918147\n 0.2336710798590986\n 0.2935153689447211\n 0.1929888055674464\n 0.090771440515613\n 0.044655520423847135\n 0.024341620652868233\n\n\nplot the results\n\nfig = Figure(size = (500, 350))\nax = Axis(fig[1, 1], xlabel = L\"\\omega\")\nlines!(ax, ωlist, dos)\n\nfig"
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