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activate in call function, maybe the shell is reinitialized?
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lrauschning committed Dec 19, 2024
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## run using source to preserve alias
#source ./example/example_workflow.sh

$CONDA/bin/conda activate msyd
$(tail -n +2 ./example/example_workflow.sh | sed -e 's/^syri/python <(echo "import syri.scripts.syri;syri.scripts.syri.main()")/' -e 's/^minimap2/.\/minimap2/' )

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