2024_sqhang_Transductive-bandits

This repository contains the code and resources for the CSE541 Course Project: Genomic Sequence Design with Transductive Linear Bandits.

Datasets

The TF-Bind8 dataset can be downloaded from the Hugging Face dataset repository.

Benchmarking on Synthetic Datasets: Run the experiments in fit_toy_dataset.ipynb.
TF-Bind8 Dataset Experiments: Run the experiments in fit_tf_bind8.ipynb.

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
.gitignore		.gitignore
RAGE.py		RAGE.py
RAGE_center.py		RAGE_center.py
RAGE_opt.py		RAGE_opt.py
README.md		README.md
XY_ORACLE.py		XY_ORACLE.py
XY_STATIC.py		XY_STATIC.py
fit_tf_bind8.ipynb		fit_tf_bind8.ipynb
fit_toy_dataset.ipynb		fit_toy_dataset.ipynb
profile_RAGE.py		profile_RAGE.py