Remove nonstandard GNU bits/stdc++.h

sriramlab · Jun 5, 2024 · 6b03f5f · 6b03f5f
1 parent afaec73
commit 6b03f5f
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Showing 10 changed files with 8 additions and 10 deletions.
diff --git a/include/arguments.h b/include/arguments.h
@@ -6,7 +6,6 @@
 #include <sstream>
 #include <map>
 #include <fstream>
-#include <bits/stdc++.h>
 #include "io.h"
 #include "std.h"
 

diff --git a/include/genotype.h b/include/genotype.h
@@ -1,6 +1,5 @@
 #ifndef GENOTYPE_H
 #define GENOTYPE_H
-#include <bits/stdc++.h>
 #include "storage.h"
 #include <Eigen/Dense>
 #include <Eigen/Core>

diff --git a/include/helper.h b/include/helper.h
@@ -1,9 +1,9 @@
 #ifndef HELPER_H
 #define HELPER_H
 
-#include <bits/stdc++.h>
 #include "time.h"
 
+#include <iostream>
 
 using namespace std;
 

diff --git a/include/mailman.h b/include/mailman.h
@@ -5,7 +5,6 @@
 #include <Eigen/Core>
 #include <Eigen/LU>
 #include <Eigen/SVD>
-#include <bits/stdc++.h>
 #include "storage.h"
 #include <assert.h>
 #include <emmintrin.h>

diff --git a/include/storage.h b/include/storage.h
@@ -1,7 +1,7 @@
 #ifndef STORAGE_H
 #define STORAGE_H
 
-#include <bits/stdc++.h>
+#include <vector>
 
 void add_to_arr(int x, int j, int beta,std::vector<unsigned> &arr);
 int extract_from_arr(int j,int beta,std::vector<unsigned> &arr);

diff --git a/src/ge_hetro_flexible.cpp b/src/ge_hetro_flexible.cpp
@@ -6,7 +6,6 @@
 #include <vector> 
 //#include <random>
 
-#include <bits/stdc++.h>
 #include <Eigen/Dense>
 #include <Eigen/Core>
 #include <Eigen/LU>

diff --git a/src/ge_hetro_flexible_multi_pheno.cpp b/src/ge_hetro_flexible_multi_pheno.cpp
@@ -6,7 +6,6 @@
 #include <vector> 
 //#include <random>
 
-#include <bits/stdc++.h>
 #include <Eigen/Dense>
 #include <Eigen/Core>
 #include <Eigen/LU>

diff --git a/src/ge_mem_flexible.cpp b/src/ge_mem_flexible.cpp
@@ -6,7 +6,6 @@
 #include <vector> 
 //#include <random>
 
-#include <bits/stdc++.h>
 #include <Eigen/Dense>
 #include <Eigen/Core>
 #include <Eigen/LU>

diff --git a/src/genotype.cpp b/src/genotype.cpp
@@ -1,7 +1,10 @@
-#include <bits/stdc++.h>
 #include "genotype.h"
 #include "storage.h"
 
+#include <iostream>
+#include <fstream>
+#include <vector>
+
 using namespace std;
 
 float genotype::get_observed_pj(const std::string &line){

diff --git a/src/storage.cpp b/src/storage.cpp
@@ -1,5 +1,6 @@
 #include "storage.h"
-#include <bits/stdc++.h>
+
+#include <vector>
 
 void add_to_arr(int x, int j, int beta,std::vector<unsigned> &arr){