Skip to content

Issues: uclahs-cds/metapipeline-DNA

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

36 Open 57 Closed
36 Open 57 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Battenberg Sex Assignment For Metapipeline question Further information is requested
#236 opened Nov 14, 2024 by graceooh
@tyamaguchi-ucla @Faizal-Eeman @yashpatel6
1
Same ID documentation for use and sanitization
#228 opened Sep 9, 2024 by yashpatel6
template-input-FASTQ has bam_header_sm and lane example information switched.
#227 opened Sep 5, 2024 by sorelfitzgibbon
Email notifications enhancement New feature or request
#222 opened Jul 30, 2024 by yashpatel6
@nwiltsie @yashpatel6
test-metapipeline-DNA-batch test case always reports success bug Something isn't working
#205 opened May 24, 2024 by nwiltsie
1
rm: cannot remove /scratch: permission denied
#203 opened May 23, 2024 by tgebo
@yashpatel6
4
Metapipeline job silently failed during recalibrate BAM - identify_outputs
#189 opened Apr 8, 2024 by nwiltsie
2
Cannot remove convert-BAM2FASTQ work directroy: Directory not empty
#186 opened Apr 3, 2024 by zhuchcn
@yashpatel6
2
WXS/Targeted - intersect_regions param for call-sSNV in template.config
#183 opened Mar 25, 2024 by Faizal-Eeman
@sorelfitzgibbon
13
Option for germline SV calling with tumor samples
#173 opened Mar 14, 2024 by yashpatel6
@yashpatel6
Make methods.get_cpus_and_memory more general
#171 opened Mar 13, 2024 by zhuchcn
Unexpected alignment name collision bug Something isn't working
#169 opened Mar 11, 2024 by graceooh
@yashpatel6
Add selected tools to the main log.info section
#162 opened Feb 13, 2024 by sorelfitzgibbon
1
Documentation request: Add instructions or link to instructions for auto-generation of input files.
#154 opened Dec 27, 2023 by alkaZeltser
Add option to run pairs of samples on separate nodes when given multiple tumors per patient in paired mode
#151 opened Dec 8, 2023 by yashpatel6
@yashpatel6
Allow choice of sample when running multi-tumor patients in paired mode with a single normal
#149 opened Nov 22, 2023 by yashpatel6
@yashpatel6
1
Remove dependency on common workDir
#145 opened Oct 27, 2023 by yashpatel6
@yashpatel6
Feature Request: Add resume logic option to pick up from individual pipeline steps enhancement New feature or request
#120 opened Jun 30, 2023 by Alfredo-Enrique
1
Individual pipeline failure not propagated to the leading job
#119 opened Jun 29, 2023 by zhuchcn
9
Cell line specific situation - N and T samples with different patient IDs enhancement New feature or request
#114 opened Jun 20, 2023 by RoniHaas
@yashpatel6
6
File not found during call-gSNP step
#111 opened Jun 9, 2023 by Alfredo-Enrique
@Alfredo-Enrique
1
Change project_id to dataset_id
#102 opened May 3, 2023 by yashpatel6
@yashpatel6
Add support for HISAT2 aligner
#88 opened Feb 2, 2023 by yashpatel6
@yashpatel6
Pipeline completes with unknown error
#80 opened Dec 22, 2022 by raagagrawal
3
Update channel data structure
#76 opened Dec 8, 2022 by yashpatel6
@yashpatel6
ProTip! Find all open issues with in progress development work with linked:pr.