Skip to content

Issues: uclahs-cds/project-method-AlgorithmEvaluation-BNCH-000082-SRCRNDSeed

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

20 Open 51 Closed
20 Open 51 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Replace templated text in README
#111 opened Oct 6, 2023 by nwiltsie
Launch Mutect2 + Battenberg + DPClust seeds [HNSC multi-region] Task A step of progress
#83 opened Dec 5, 2022 by philsteinberg
Launch sSNV-caller + sCNA-caller + src-tool seeds [HNSC multi-region mode] Story A group of tasks
#81 opened Nov 29, 2022 by philsteinberg
3 of 6 tasks
Run pipeline-call-SRC
Launch SomaticSniper + Battenberg + DPClust seeds [HNSC multi-region] Task A step of progress
#68 opened Nov 15, 2022 by philsteinberg Run pipeline-call-SRC
Launch Strelka2 + Battenberg + DPClust seeds [HNSC multi-region] Task A step of progress
#66 opened Nov 15, 2022 by philsteinberg Run pipeline-call-SRC
Update docker images in default.config
#64 opened Oct 26, 2022 by philsteinberg
@yashpatel6
6
Add new parser for HATCHET Task A step of progress
#62 opened Oct 26, 2022 by philsteinberg CNA Parsers
Run HATCHET on Head and Neck samples
#61 opened Oct 26, 2022 by philsteinberg
1
Fix HATCHET pipeline
#59 opened Oct 26, 2022 by philsteinberg
Get the CCF and # of SNVs in each subclone Task A step of progress
#45 opened Aug 4, 2022 by philsteinberg Seeds!
4
Analysis of Pyclone VI results help wanted Extra attention is needed
#36 opened Aug 2, 2022 by philsteinberg
6
Update SRC-pipeline example config enhancement New feature or request
#32 opened Jul 29, 2022 by philsteinberg
Add read-count functionality to address multiple ALT reads enhancement New feature or request
#28 opened Jul 27, 2022 by philsteinberg
Refactor list_variants by adding to superclass enhancement New feature or request
#27 opened Jul 26, 2022 by philsteinberg
Add support for TITAN in pipeline-call-SRC, perform integration test Task A step of progress
#26 opened Jul 26, 2022 by lydiayliu CNA Parsers
Add support for FACETS in pipeline-call-SRC, perform integration test Task A step of progress
#25 opened Jul 26, 2022 by lydiayliu CNA Parsers
Add new parser for TITAN Task A step of progress
#23 opened Jul 26, 2022 by lydiayliu CNA Parsers
Add new parser for FACETS Task A step of progress
#22 opened Jul 26, 2022 by lydiayliu CNA Parsers
3
New CNA parsers for pipeline-call-SRC Story A group of tasks
#20 opened Jul 26, 2022 by lydiayliu
2 of 6 tasks
CNA Parsers
Update README at SRC-util enhancement New feature or request
#19 opened Jul 22, 2022 by lydiayliu
ProTip! Exclude everything labeled bug with -label:bug.