Release 2024-12-29

What's Changed

• Aadd OMOP classification file and generation pipeline by @zhengj2007 in #774
• Updated scripts by @yupingzheng00000 in #775
• Update vaccine platform by @xingxianli in #779
• Update vaccine-induced response branch by @zhengj2007 in #782
• Biomarker and correlates of protection by @zhengj2007 in #783
• Add 3 new vaccine adjuvants by @zhengj2007 in #788
• Fix known issues of process related terms by @zhengj2007 in #789
• Make 2024-12-29 release candidate by @zhengj2007 in #790

Full Changelog: v2024-11-23...v2024-12-29

Release 2024-11-23

What's Changed

• Add scripts by @yupingzheng00000 in #764
• Modify the VO_OMOP_mappings.xlsx by @xingxianli in #765
• Add two new vaccine adjuvants by @zhengj2007 in #769
• Clean up by @zhengj2007 in #770
• Cleanup annotations by @zhengj2007 in #771
• Cleanup vaccines by @zhengj2007 in #772
• Release 20241123 by @zhengj2007 in #773

Full Changelog: v2024-09-22...v2024-11-23

Release 2024-09-22

What's Changed

• Fda vaccine update pull request by @xingxianli in #735
• implement flu season property by @xingxianli in #738
• Updated 'licensed vaccine role' and 'authorized vaccine role' associated with vaccines by @zhengj2007 in #744
• clean up equivalent axioms by @zhengj2007 in #745
• fix #742 by @xingxianli in #746
• Fixed some known issues by @zhengj2007 in #750
• add 'IL-12-MOP (CTX-1796)' vaccine adjuvant by @zhengj2007 in #751
• Fixed issues #747, #748, and #749 by @zhengj2007 in #752
• Added vaccine intermediate terms to group RxNorm/RxNorm Extension terms by @zhengj2007 in #754
• Fix755 by @xingxianli in #756
• Add COVID-19 xbb vaccines by @zhengj2007 in #757
• release candidate 2024-09-22 by @zhengj2007 in #758

Full Changelog: v2024-08-11...v2024-09-22

Release 2024-08-11

What's Changed

• FDA updated vaccines by @xingxianli in #727
• updated vaccine_RxNorm by @xingxianli in #728
• revise vaccine.csv by @xingxianli in #729
• add two new vaccine adjuvant per request by @zhengj2007 in #732
• merged templates by @xingxianli in #733
• Release candidate 20240808 by @zhengj2007 in #734

Full Changelog: v2024-07-13...v2024-08-11

Release 2024-07-13

What's Changed

• updated comments and filename by @xingxianli in #723
  • In vo_RxNorm.csv, a column added to indicate which templates (vaccine.csv, vaccine_RxNorm.csv, vaccine_component.csv, protein.csv) they are in.
  • Updated the comment column in vaccine.csv, vaccine_RxNorm.csv, vaccine_component.csv, and protein.csv. (Indicate whether RxNorm, RxNorm Extension, or RxNorm not in OMOP)
  • Updated the VO:0003364 ‘Neisseria meningitidis serogroup B strain NZ98/254 outer membrane vesicle’ for both RxNorm and RxNorm Extension.
  • Updated the final 180 terms in VO_RxNorm.csv
  • Updated and checked the repeated terms in vo_RxNorm.csv, and added repeat comments.
  • Removed 127 terms in vaccine_component.owl, 4 terms protein.owl, added 166 new terms in vaccine_RxNorm.owl; updated file vo_new_terms_IDs.xlsx.
  • Updated the comments of vo_RxNorm.csv about which file terms are in.
• Cancer vaccines by @zhengj2007 in #724
  • Added two new route of administration terms
  • Added 125 new cancer vaccines in CanVaxKB.
• Updated high-level VO terms by @zhengj2007 in #725
  • Relabeled two terms:
    • VO:0001243 ‘immunizes host’ -> ‘immunizes recipient’
    • VO:0001274 ‘vaccine host role’ -> ‘vaccine recipient role’
  • Updated definition of following terms:
    • VO:0000002 vaccination
    • VO:0000494 vaccine immunization
    • VO:0000490 immunization
    • VO:0000492 passive immunization
    • VO:0000491 active immunization
    • VO:0001274 vaccine recipient role
    • VO:0000278 vaccine function
    • VO:0001243 immunizes recipient
    • VO:0000001 vaccine, issue: #715
  • Modified definition of “preventive vaccine function” and “therapeutic vaccine function”, issue: #714
• Release 2024-07-13 by @zhengj2007 in #726
  • Added 4 new VO creators
  • Fixed wrong function terms used in cancer vaccine template
  • Made release candidate 2024-07-13

Full Changelog: v2024-06-26...v2024-07-13

Release 2024-06-26

What's Changed

• Rx norm extension by @zhengj2007 in #718
  • Added 3205 vaccines in RxNorm extension with associated brand name, dose form, and package terms.
• RxNorm by @zhengj2007 in #719
  • Added 1188 RxNorm concepts as vaccines
  • Added 19 RxNorm concepts as vaccine components
  • Added 631 RxNorm Extension concepts as vaccines
  • Added new brand names, dose forms, and drug package associated with vaccines
• Rx norm update by @zhengj2007 in #720
  • Added 102 vaccines corresponding to RxNorm concepts
  • Updated VO to RxNorm and RxNorm extension mappings
• Add cvx concept by @zhengj2007 in #721
  • Add 3 CVX code concepts
  • Add OMOP concept IDs for CVX codes
• Preparation of Release 20240626 by @zhengj2007 in #722

Full Changelog: v2024-06-09...v2024-06-26

Release 2024-06-09

What's Changed

• Updated influenza vaccine related terms by @zhengj2007 in #713
• Update parents of 3 CVX code related terms by @zhengj2007 in #716
• Made release candidate 20240609 by @zhengj2007 in #717

Full Changelog: v2024-06-01...v2024-06-09

Release 2024-06-01

What's Changed

• Update the code for 'comment' and 'seeAlso' columns content extraction by @yupingzheng00000 in #701
• Fix some issues by @zhengj2007 in #702
• Added VO term and CVX code mappings by @zhengj2007 in #703
• Add subCategories by @zhengj2007 in #704
• Added missing CVX code information by @zhengj2007 in #705
• Add CVX terms by @zhengj2007 in #707
• Fix issues by @zhengj2007 in #708
• Added hepatitis A related vaccines defined in RxNorm Extension by @zhengj2007 in #709
• Added VO terms for CVX codes and updated VO and CVX code mappings by @zhengj2007 in #710
• Update drug brand name by @zhengj2007 in #711
• Added vaccine study minimal information standard terms by @zhengj2007 in #712

Full Changelog: v2024-04-09...v2024-06-01

Release 2024-04-09

What's Changed

• Cancer vaccine by @xingxianli in #696
• Update cancer vaccine by @zhengj2007 in #698
  • Added 'whole cell cancer vaccine' and 'whole tumor cell cancer vaccine', issue: #683
  • Changed label and definition of term VO_0005502, issue: #695
  • Added 'peptide vaccine role' and 'DNA cancer vaccine'
  • Added vaccine function logic axioms to cancer vaccines
  • Updated platform of some cancer vaccines
• Add two new vaccine adjuvant by @zhengj2007 in #699
  • Added 'Cowpea mosaic virus vaccine adjuvant' with ID: VO:0006107, issue: #684
  • Added 'nexavant vaccine adjuvant' with ID: VO:0006108, issue: #694
• make release 2024-04-09 by @zhengj2007 in #700

Full Changelog: v2024-03-20...v2024-04-09

Release 2024-03-20

What's Changed

• Upload the code which clean up the the column term_editors of CSV files by @yupingzheng00000 in #685
• An update of the Excel list "term_editor_names" by @hlhlty in #687
• Update vaccine terms by @zhengj2007 in #689
• update definitions of 4 terms by @zhengj2007 in #691
• Add two vaccine adjuvants by @zhengj2007 in #692
• make release 20240320 by @zhengj2007 in #693

New Contributors

• @yupingzheng00000 made their first contribution in #685
• @hlhlty made their first contribution in #687

Full Changelog: v2024-02-07...v2024-03-20