scATAC-pro_V1.1.2
wbaopaul
released this
25 May 17:48
·
200 commits
to master
since this release
V1.1.2, updates includes:
- integrate: add VFACS (Variable Features Across ClusterS) option for the integration module,
which reselect variable features across cell clusters after an initial clustering, followed by
another round of dimension reduction and clustering, specify Integrate_by = VFACS in configure file - clustering: filter peaks before clustering (accessible in less than 0.5% of cells) and
remove rare peaks (accessible in less than 1% of cells) from the variable features list - reConsMtx: enable specifying a path for saving reconstructed matrix (optional)