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scATAC-pro_V1.1.2

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@wbaopaul wbaopaul released this 25 May 17:48
· 200 commits to master since this release

V1.1.2, updates includes:

  • integrate: add VFACS (Variable Features Across ClusterS) option for the integration module,
    which reselect variable features across cell clusters after an initial clustering, followed by
    another round of dimension reduction and clustering
    , specify Integrate_by = VFACS in configure file
  • clustering: filter peaks before clustering (accessible in less than 0.5% of cells) and
    remove rare peaks (accessible in less than 1% of cells) from the variable features list
  • reConsMtx: enable specifying a path for saving reconstructed matrix (optional)