fixing spacing issue #260
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| name: Build Test | |
| # Manually trigger the action with a button in GitHub | |
| # Alternatively, trigger on release / push etc. | |
| on: | |
| push: | |
| workflow_dispatch: | |
| jobs: | |
| test-full: | |
| name: Test on Nextflow Tower | |
| # Don't try to run on forked repos | |
| # run when commit message contains [test] | |
| if: github.repository == 'wslh-bio/spriggan' && contains(github.event.head_commit.message, '[test]') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: k-florek/tower-action@main | |
| # Use repository secrets for sensitive fields | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.NEXTFLOW_TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | |
| run_name: ${{ github.job }}_${{ github.run_attempt }} | |
| workdir: ${{ secrets.AWS_S3_BUCKET }}/work/${{ github.sha }} | |
| # Set any custom pipeline params here - JSON object as a string | |
| parameters: | | |
| { | |
| "outdir": "${{ secrets.AWS_S3_BUCKET }}/results/${{ github.sha }}" | |
| } | |
| # List of pipeline config profiles to use - comma separated list as a string | |
| profiles: test_full,aws_tower | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: Tower debug log file | |
| path: tower_action_*.log |