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Can Alkan edited this page Jul 22, 2018 · 1 revision

  • mrsFAST: Our alternative Illumina read mapper that finds only mismatches to increase mapping speed. Also supports bisulfite mapping.

  • lordFAST: Read mapper for long reads generated by PacBio and ONT platforms.

  • mrCaNaVaR: Read depth analysis method to characterize segmental duplications and predict absolute copy numbers.

  • TARDIS: Toolkit for automated and rapid discovery of structural variants using short paired-end reads.

  • VALOR: Structural variation discovery using long range information in Linked-Reads

  • drFAST: Read mapper for di-base color-space reads generated with the SOLiD platform.

  • sirFAST: Read mapper for short interleaved reads generated with the Complete Genomics platform.

  • Pamir: Novel sequence insertion discovery framework.

  • SCALCE: Tool for compression of FASTQ files.

  • DeeZ: Tool for compression of BAM files.

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