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Species
kalden edited this page Mar 20, 2013
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The final part of the protocol file is used to define the species involved in the simulation using species mark-ups. Each species is defined from one of several different classes, and each is given a name and has some defining parameters. In the iDynoMiCS source it is possible to introduce nearly any type of species one would like, but at this point there are a few select species types that are possible to use: Bacterium, BactEPS, BactAdaptable, or ParticulateEPS, all found in the package simulator.agent.zoo in the iDynoMiCS source. We will describe each of the available species in turn.