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Damien Farrell edited this page Dec 20, 2016 · 1 revision

Useful references for small RNA mapping and counting:

Genomic alignment of small RNA sequences such as microRNAs poses a challenge due to their short length (∼21 nt). Most aligners were designed for the longer read sizes used in mRNA-seq.

Evaluation of microRNA alignment techniques

The Subread user manual contains a section on microRNA counting.

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