finish up initial draft for testing #2
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| # # Example of workflow trigger for calling workflow (the client). | ||
| # name: ci-vizard | ||
| # on: | ||
| # pull_request: | ||
| # branches: ["dev"] | ||
| # push: | ||
| # branches: ["dev"] | ||
| # jobs: | ||
| # ci: | ||
| # uses: qiime2/distributions/.github/workflows/lib-community-ci.yaml@dev | ||
| # with: | ||
| # distro: amplicon | ||
| # release-epoch: 2024.10 | ||
| # github-org-name: qiime2 | ||
| # github-repo-name: q2-vizard | ||
| # TODO: note that default is main branch; can leave blank unless special target | ||
| # github-env-ref: dev | ||
| # env-file-name: 2024.5-vizard-environment.yml | ||
| on: | ||
| workflow_call: | ||
| inputs: | ||
| distro: | ||
| description: "Distro to test with" | ||
| type: string | ||
| required: true | ||
| release-epoch: | ||
| description: "Release target for distro to test with" | ||
| type: number | ||
| required: true | ||
| github-org: | ||
| description: "Organization or username on Github" | ||
| type: string | ||
| required: true | ||
| github-repo: | ||
| description: "Plugin repository name on Github" | ||
| type: string | ||
| required: true | ||
| github-env-ref: | ||
| description: "Target branch/ref name on Github for environment file" | ||
| type: string | ||
| required: false | ||
| default: '' | ||
| env-file-name: | ||
| description: "Name of environment file to test with" | ||
| type: string | ||
| required: true | ||
| jobs: | ||
| install-env-and-test: | ||
| strategy: | ||
| matrix: | ||
| os: [ubuntu-latest, macos-12] | ||
| runs-on: ${{ matrix.os }} | ||
| env: | ||
| name: ${{ inputs.github-repo }} | ||
| filepath: https://raw.githubusercontent.com/${{ inputs.github-org }}/${{ inputs.github-repo }}/${{ inputs.github-env-ref }}/environment-files/${{ inputs.env-file-name }} | ||
| - uses: actions/checkout@v3 | ||
| - uses: conda-incubator/setup-miniconda@v3 | ||
| with: | ||
| miniconda-version: 'latest' | ||
| python-version: 3.9 | ||
| environment-file: ${{ env.filepath }} | ||
| activate-environment: ${{ env.name }} | ||
| - name: 'install pytest, run qiime info & run tests' | ||
| shell: bash -el {0} | ||
| run: | | ||
| conda install pytest | ||
| qiime info | ||
| pytest | ||
| # - name: 'Install and activate test environment' | ||
| # run: | | ||
| # conda env create | ||
| # -n ${{ env.github_repo }} | ||
| # -f https://raw.githubusercontent.com/{{ github-org }}/{{ github-repo }}/{{ github-env-ref }}/environment-files/{{ env-file-name }} | ||
| # conda activate ${{ env.github_repo }} | ||
| # TODO: run tests using makefile | ||
| - name: 'Run tests for ${{ env.github_repo }}' | ||
