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MSE Loss is not capable of handling ignored targets
#21
opened Jun 23, 2022 by
SebieF
updated Jun 23, 2022
Multi-class prediction
enhancement
New feature or request
question
Further information is requested
#28
opened Jul 26, 2022 by
joaquimgomez
updated Jul 27, 2022
Embeddings do not get re-computed automatically
bug
Something isn't working
wontfix
This will not be worked on
#50
opened Oct 7, 2022 by
SebieF
updated Oct 7, 2022
Implement embeddings calculation "on the fly"
enhancement
New feature or request
#58
opened Nov 10, 2022 by
SebieF
updated Nov 10, 2022
4 tasks
Support more visualization platforms
enhancement
New feature or request
good first issue
Good for newcomers
#42
opened Sep 23, 2022 by
SebieF
updated Nov 22, 2022
1 of 2 tasks
Add residue_to_value protocol
enhancement
New feature or request
#27
opened Jul 22, 2022 by
SebieF
updated Nov 22, 2022
2 tasks
BatchNorm1D does not work with batches of size 1
bug
Something isn't working
wontfix
This will not be worked on
#49
opened Sep 30, 2022 by
SebieF
updated Jan 3, 2023
Add random comparison baseline
enhancement
New feature or request
good first issue
Good for newcomers
#60
opened Nov 22, 2022 by
SebieF
updated Jan 5, 2023
Support multiple hyperparameters for hold_out cross validation
enhancement
New feature or request
good first issue
Good for newcomers
#68
opened Jan 5, 2023 by
SebieF
updated Jan 5, 2023
Adding BERT model and protocol = transformer encoder model + masked language modeling (MLM)
#70
opened Mar 2, 2023 by
prihoda
updated Mar 2, 2023
[ppi] Interaction mode not compatible with all protocols yet
enhancement
New feature or request
#72
opened Mar 4, 2023 by
SebieF
updated Mar 4, 2023
2 tasks
Create tutorial how-to use a custom embedder
documentation
Improvements or additions to documentation
#76
opened Apr 14, 2023 by
SebieF
updated Apr 14, 2023
Do a sanity check of the inferencer module
good first issue
Good for newcomers
testing
Related to automated tests
#83
opened Jun 30, 2023 by
SebieF
updated Jan 12, 2024
Look into AI Code suggestions
bug
Something isn't working
enhancement
New feature or request
good first issue
Good for newcomers
maintenance
Code or example maintainance
#93
opened Jun 16, 2024 by
SebieF
updated Jun 16, 2024
elapsed_time_total is misleading
bug
Something isn't working
good first issue
Good for newcomers
#97
opened Jul 26, 2024 by
SebieF
updated Aug 1, 2024
Use logging statements consistently in all places
good first issue
Good for newcomers
maintenance
Code or example maintainance
#104
opened Aug 19, 2024 by
SebieF
updated Aug 19, 2024
Publish as a PyPi package
enhancement
New feature or request
maintenance
Code or example maintainance
#108
opened Sep 5, 2024 by
SebieF
updated Sep 5, 2024
👩🔬 Add LoRA layers to fine-tune protein language models for embeddings calculation
enhancement
New feature or request
refactoring
Code or standardization refactorings
#85
opened Sep 7, 2023 by
SebieF
updated Sep 10, 2024
7 tasks
Add bayesian optimization for hyperparameter optimization
enhancement
New feature or request
good first issue
Good for newcomers
#114
opened Oct 14, 2024 by
SebieF
updated Oct 14, 2024
ONNX compatibility problems
bug
Something isn't working
#111
opened Oct 8, 2024 by
mheinzinger
updated Nov 1, 2024
Add integration with huggingface dataset API
enhancement
New feature or request
good first issue
Good for newcomers
#118
opened Nov 4, 2024 by
SebieF
updated Nov 4, 2024
Add automatic dimensionality reduction feature for input vectors
enhancement
New feature or request
good first issue
Good for newcomers
#113
opened Oct 14, 2024 by
SebieF
updated Nov 11, 2024
Enable using an ONNX embedder model
breaking
Breaking change
enhancement
New feature or request
refactoring
Code or standardization refactorings
#125
opened Dec 2, 2024 by
SebieF
updated Dec 2, 2024
Add heuristics to ensure unique and correct model names
enhancement
New feature or request
#127
opened Dec 2, 2024 by
SebieF
updated Dec 2, 2024
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