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26 Open 27 Closed
26 Open 27 Closed
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Issues list

Add heuristics to ensure unique and correct model names enhancement New feature or request
#127 opened Dec 2, 2024 by SebieF
Enable automatic dataset splitting enhancement New feature or request good first issue Good for newcomers
#126 opened Dec 2, 2024 by SebieF
Enable using an ONNX embedder model breaking Breaking change enhancement New feature or request refactoring Code or standardization refactorings
#125 opened Dec 2, 2024 by SebieF
Add integration with huggingface dataset API enhancement New feature or request good first issue Good for newcomers
#118 opened Nov 4, 2024 by SebieF
Add bayesian optimization for hyperparameter optimization enhancement New feature or request good first issue Good for newcomers
#114 opened Oct 14, 2024 by SebieF
Add automatic dimensionality reduction feature for input vectors enhancement New feature or request good first issue Good for newcomers
#113 opened Oct 14, 2024 by SebieF
2
ONNX compatibility problems bug Something isn't working
#111 opened Oct 8, 2024 by mheinzinger
@SebieF
4
Publish as a PyPi package enhancement New feature or request maintenance Code or example maintainance
#108 opened Sep 5, 2024 by SebieF
@SebieF
Use logging statements consistently in all places good first issue Good for newcomers maintenance Code or example maintainance
#104 opened Aug 19, 2024 by SebieF
elapsed_time_total is misleading bug Something isn't working good first issue Good for newcomers
#97 opened Jul 26, 2024 by SebieF
Look into AI Code suggestions bug Something isn't working enhancement New feature or request good first issue Good for newcomers maintenance Code or example maintainance
#93 opened Jun 16, 2024 by SebieF
👩‍🔬 Add LoRA layers to fine-tune protein language models for embeddings calculation enhancement New feature or request refactoring Code or standardization refactorings
#85 opened Sep 7, 2023 by SebieF
7 tasks
4
Do a sanity check of the inferencer module good first issue Good for newcomers testing Related to automated tests
#83 opened Jun 30, 2023 by SebieF
Create tutorial how-to use a custom embedder documentation Improvements or additions to documentation
#76 opened Apr 14, 2023 by SebieF
@SebieF
[ppi] Interaction mode not compatible with all protocols yet enhancement New feature or request
#72 opened Mar 4, 2023 by SebieF
2 tasks
Adding BERT model and protocol = transformer encoder model + masked language modeling (MLM)
#70 opened Mar 2, 2023 by prihoda
[ppi] Concat does not work for 0-dimensional (scalar) tensors bug Something isn't working
#69 opened Feb 28, 2023 by SebieF Version 1.0.0
@SebieF
Support multiple hyperparameters for hold_out cross validation enhancement New feature or request good first issue Good for newcomers
#68 opened Jan 5, 2023 by SebieF
Add random comparison baseline enhancement New feature or request good first issue Good for newcomers
#60 opened Nov 22, 2022 by SebieF
Implement embeddings calculation "on the fly" enhancement New feature or request
#58 opened Nov 10, 2022 by SebieF
4 tasks
Embeddings do not get re-computed automatically bug Something isn't working wontfix This will not be worked on
#50 opened Oct 7, 2022 by SebieF
BatchNorm1D does not work with batches of size 1 bug Something isn't working wontfix This will not be worked on
#49 opened Sep 30, 2022 by SebieF
1
Support more visualization platforms enhancement New feature or request good first issue Good for newcomers
#42 opened Sep 23, 2022 by SebieF
1 of 2 tasks
1
Multi-class prediction enhancement New feature or request question Further information is requested
#28 opened Jul 26, 2022 by joaquimgomez
1
Add residue_to_value protocol enhancement New feature or request
#27 opened Jul 22, 2022 by SebieF
2 tasks
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