Resources

This page contains links to useful resources that may help you in developing and understanding the project. Feel free to add useful links that you find.

Analytical/Bioinformatic Tools

• BLAST
• Biopython
• Panseq
• RGI (CARD)

Biology

• Digital pathogen surveillance
• Public Health Genomics, E. coli example
• Antibiotic-resistance predictions in-silico
• Pan-genome review

Blazegraph

• Blazegraph wiki

Coffeescript

• Official Coffeescript website
• The Little Book on Coffeescript

Flask

• Official Flask website

Mithril

• Official Mithril website
• Mithril presentation by Leo Horie
• Mithril tutorial (EntryList and Form)
• D3 and Mithril example (coffeescript)
• Library of Bootstrap mithril components

Ontologies

• Protégé OWL Tutorial
• Biological ontologies (OBO)
• GFVO
• CARD Ontology

Other Javascript libraries/plugins

• Official D3 site
• Select2 examples

SuperPhy

• SuperPhy paper

UMLs

• PlantUML