genome analysis epi page design
View genome group context in map, tree and metadata summary
Route: /vis
- View list and summary of metadata properties for group
- View distribution of group on geographical map
- View distribution of group on phylogenetic tree
- Metadata displayed in table, in tree node and for given region in map can be changed
- Genomes displayed in map, in tree and in the table can be filtered based on metadata
- Only genomes in the group are displayed
- Change from country-level to state/province-level to city-level resolution
- Search for individual locations or genome names
- Zoom, pan and return to starting layout
- Metadata summaries are shown graphically for each region with hover/click function
- Clicking on subtree node generates pop-up with following options:
- If leaf node, forward to detailed view of genome or in screen pop-up
- Launch detailed view of subtree (subtree fills view window)
- Search for genome names in tree
- Zoom, pan and return to starting layout
- Genomes matching selected locations listed in table along with metadata. Individual genomes can be removed by clicking
deleteon table entry
- A graphical summary of each metadata property is shown for the group and for non-group genomes. Users can select which property to look at